Main public logs

Combined display of all available logs of Network for Advanced NMR. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 16:33, 10 June 2025 Mmaciejewski talk contribs created page Template:FacilityDashboardNavigation (Created page with "<div style="border:1px solid #aaa; padding:1em; width:350px; background:#F9F9F9; float:right; clear:right; margin:1em;"> '''Facility Dashboard Navigation''' <ul> <li>Managing Facilities Overview <ul> <li>Facility Info</li> <li>Spectrometers</li> <li>Probes</li> <li>Instrument Status</li> <li>NDTS Software</li>...")
• 20:32, 9 June 2025 Mmaciejewski talk contribs created page Manage Facility Users (Created page with "= Managing Spectrometer Users = This page describes how facility managers can manage users for NDTS, the application that automatically harvests data from NMR spectrometers into the NAN archive. NDTS includes a graphical interface ('''NDTS-GUI''') that runs on each spectrometer workstation and allows users to view and change harvesting settings, including the selection of a '''NAN user''' to associate with each dataset. == User Mapping Overview == Each spectrometer wo...") Tag: Visual edit: Switched
• 19:45, 9 June 2025 Mmaciejewski talk contribs created page Template:NDTS Navbox (Created page with "<div style="border:1px solid #aaa; padding: 1em; width: 250px; background:#F9F9F9; float:right; clear:right; margin:1em;"> '''NDTS User Guide Navigation''' <ul> <li>NDTS Installation Overview</li> <li>Installing and Configuring the Gateway Software</li> <li>Installing and Configuring the Daemon Software <ul> <li>Enabling TopSpin Accounting|Setting up accounting TopSpin < 4....")
• 17:57, 9 June 2025 Mmaciejewski talk contribs created page Monitoring TopSpin Accounting File (Created page with "== Overview == This page describes how NDTS utilizes the TopSpin accounting file in data harvesting for TopSpin < 4.x ==== '''Accounting Must Be Enabled per User''' ==== * '''Prerequisite''': Each TopSpin user must have '''Accounting''' enabled * Without this setting, TopSpin will '''not''' signal that an acquisition has ended, so the daemon cannot gather the experiment. ==== '''Experiment-Gathering Trigger (TopSpin < 4.x)''' ==== * TopSpin writes/updates an acc...") Tag: Visual edit
• 17:16, 9 June 2025 Mmaciejewski talk contribs created page Enabling TopSpin Accounting (Created page with "== Overview == Bruker offers a built-in Accounting feature that that allows labs and facilities to track usage of the spectrometer on a per-user or per-project basis. It's often used by core facilities and shared instrumentation environments to monitor time spent acquiring data, enforce user access limits, or generate billing records. == Requirements for TopSpin < 4.x == Prior to TopSpin 4.x NAN utilizes the Bruker Accounting file to track when experiments start and end...") Tag: Visual edit
• 17:07, 9 June 2025 Mmaciejewski talk contribs created page File:Enable-accounting.png
• 17:07, 9 June 2025 Mmaciejewski talk contribs uploaded File:Enable-accounting.png
• 15:44, 9 June 2025 Mmaciejewski talk contribs created page NDTS Experiment Harvesting (Created page with "== Overview == == Identifying acquisition start and end events == The daemon detects when TopSpin or VNMRj is launched, who launched it, and whether it controls the spectrometer. How experiment start and end events are detected varies depending on the software version controlling the spectrometer: * '''VNMRj''' - the daemon listens to InfoProc network messages to detect transitions in status (e.g. idle to acquiring) * '''TopSpin 3.x''' - the daemon uses inotify (ReadDi...") Tag: Visual edit
• 15:10, 5 June 2025 Mmaciejewski talk contribs created page File:Manual-harvest.png
• 15:10, 5 June 2025 Mmaciejewski talk contribs uploaded File:Manual-harvest.png
• 18:14, 4 June 2025 Mmaciejewski talk contribs created page File:Experiment-details.png
• 18:14, 4 June 2025 Mmaciejewski talk contribs uploaded File:Experiment-details.png
• 17:37, 4 June 2025 Mmaciejewski talk contribs created page File:NDTS-GUI.png
• 17:37, 4 June 2025 Mmaciejewski talk contribs uploaded File:NDTS-GUI.png
• 16:07, 4 June 2025 User account Jglushka talk contribs was created automatically
• 16:07, 4 June 2025 User account Lmorris talk contribs was created automatically
• 14:48, 4 June 2025 Mmaciejewski talk contribs created page NDTS-GUI (Created page with "Overview NDTS installations on the spectrometer workstation are comprised of the daemon which runs as a service and the NDTS graphical user interface (NDTS-GUI) which provides status information and allows users to make changes to harvesting status, NAN user, and metadata that will be associated with datasets. NDTS is designed to automatically harvest datasets as they complete when harvesting is set to "on", but datasets can also be manually harvested through the NDTS-GU...") Tag: Visual edit: Switched
• 19:35, 3 June 2025 Mmaciejewski talk contribs created page NDTS Daemon and GUI Update Example (Created page with "<pre> [nmradmin@centos5]$ tar xv data-transport-daemon.centos5-0.1.0.tar [nmradmin@centos5]$ cd dtdaemon-installer [nmradmin@centos5 dtdaemon-installer]$ sudo ./install.sh install directory exists - performing upgrade... Wed May 11 07:15:37 2022 LOG_START Started dtd logger. [nmradmin@centos5 dtdaemon-installer]$ sudo /sbin/service data-transport-daemon status data-transport-daemon (pid 6148) is running... </pre>")
• 19:34, 3 June 2025 Mmaciejewski talk contribs created page NDTS Daemon and GUI Install Example (Created page with "<pre> [nmradmin@centos5]$ tar xv data-transport-daemon.centos5-0.1.0.tar [nmradmin@centos5]$ cd dtdaemon-installer [nmradmin@centos5 dtdaemon-installer]$ sudo ./install.sh install directory does not exist - performing new install... Enter the gateway IP address: 155.37.xx.xx Enter the instrument name: test-drone-centos5 Enter the workstation UUID: ede3cd8e-0c30-4ea3-xxxx-yyyyyyyyyyyy Wed May 11 06:18:31 2022 LOG_START Started dtd logger. [nmradmin@centos5 dtdaemon-insta...") Tag: Visual edit: Switched
• 19:29, 3 June 2025 Mmaciejewski talk contribs created page NDTS Gateway Update Example (Created page with "<pre> cbontempi@devchris:/home/cbontempi/dtgateway-installer$ sudo ./install.sh File /etc/systemd/system/data-transport-gateway.service exists Requirement already satisfied: pip==20.0.2 in ./venv/lib/python3.8/site-packages (20.0.2) Requirement already satisfied: requests in ./venv/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.27.1) Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.8/site-packages (from requests->-r requirements...") Tag: Visual edit: Switched
• 19:22, 3 June 2025 Mmaciejewski talk contribs created page NDTS Gateway Install Example (Created page with "<code> cbontempi@devchris:/home/cbontempi$ tar xv data-transport-gateway-0.1.0.tar cbontempi@devchris:/home/cbontempi$ cd dtgateway-installer cbontempi@devchris:/home/cbontempi/dtgateway-installer$ sudo ./install.sh Copying data-transport-gateway.service to /etc/systemd/system... Created symlink /etc/systemd/system/multi-user.target.wants/data-transport- gateway.service → /etc/systemd/system/data-transport-gateway.service. Requirement already satisfied: pip==20.0.2 in...") Tag: Visual edit: Switched
• 15:46, 3 June 2025 Apozhidaeva talk contribs created page File:Context menu for sample actions.png
• 15:46, 3 June 2025 Apozhidaeva talk contribs uploaded File:Context menu for sample actions.png
• 15:43, 3 June 2025 Apozhidaeva talk contribs created page File:Navigation Pane.png
• 15:43, 3 June 2025 Apozhidaeva talk contribs uploaded File:Navigation Pane.png
• 13:59, 3 June 2025 Mmaciejewski talk contribs deleted page NDTS Daemon installation components (content was: "= Components of the NDTS Daemon Installation = All daemon-related files reside under <code>/opt/nan-dtdaemon</code> (except the SysV service script). Knowing where each file lives helps with troubleshooting, backups, and upgrades. == '''Top-Level Executable and Service Script''' == {| class="wikitable" ! Path !! Purpose |- | <code>/opt/nan-dtdaemon/data-tran...", and the only contributor was "Mmaciejewski" (talk))
• 13:48, 3 June 2025 Mmaciejewski talk contribs deleted page NDTS Daemon Configuration (content before blanking was: "<span style="display:inline-block; margin-bottom:1em;">← Back to NAN Data Transport System Overview</span> = Configuring the Daemon = The NDTS daemon reads its settings from a simple key/value dat file === Location === <pre>/opt/nan-dtdaemon/data/ndtd_configuration.dat</pre> The file may list parameters in any order. Edit with ''nano'' or your favorite editor <pre>sudo nano /opt/nan-dtdaemon/data/ndtd_configuration.dat</pre...")
• 13:24, 3 June 2025 Mmaciejewski talk contribs created page NDTS Daemon Installation (Created page with "== '''Daemon Installation (Workstation)''' == === Prerequisites === # '''Gateway IP address''' # Exact '''Instrument Name''' (set in the Facility Dashboard – no spaces) # '''Workstation UUID''' (generated when the spectrometer was added) <mark>WARNING: If you are installing on Alma Linux make sure that the <code>'''chkconfig'''</code> package is installed before proceeding. Without this service package, the NDTS Workstation will not properly install or run on Alma.</m...")
• 13:22, 3 June 2025 Mmaciejewski talk contribs created page NDTS Gateway Installation (Created page with "== '''Gateway Installation''' == === Prerequisites === * A '''Gateway UUID''' supplied by the NAN Repository administrator * A Linux host (Ubuntu 20.04 or later recommended) reachable by all workstations * TCP port '''60195''' open inbound from those workstations === Installation Steps === <pre> # Copy the .gz file to the gateway computer tar xf data-transport-gateway-<version>.tar.gz cd dtgateway-installer sudo ./install.sh # → You will be prompted only for the Gate...") Tag: Visual edit: Switched
• 19:47, 2 June 2025 Apozhidaeva talk contribs created page File:New Sample.png
• 19:47, 2 June 2025 Apozhidaeva talk contribs uploaded File:New Sample.png
• 19:31, 2 June 2025 Mmaciejewski talk contribs created page NDTS Daemon installation components (Created page with "= Components of the NDTS Daemon Installation = All daemon-related files reside under <code>/opt/nan-dtdaemon</code> (except the SysV service script). Knowing where each file lives helps with troubleshooting, backups, and upgrades. == '''Top-Level Executable and Service Script''' == {| class="wikitable" ! Path !! Purpose |- | <code>/opt/nan-dtdaemon/data-transport-daemon</code> || Main daemon executable. Forks, then exits; detects if another instance is running. |- |...") Tag: Visual edit: Switched
• 19:21, 2 June 2025 Mmaciejewski talk contribs created page NDTS Daemon Operation (Created page with "= Running and Monitoring the Daemon = This page explains how to control the **data-transport-daemon** service, verify connectivity, and interpret the logs produced on each spectrometer workstation. == '''Starting, Stopping, and Checking Status''' == <pre> # Start the daemon sudo /sbin/service data-transport-daemon start # Stop the daemon sudo /sbin/service data-transport-daemon stop # Restart (reloads configuration) sudo /sbin/service data-transport-daemon restart #...") Tag: Visual edit: Switched
• 18:40, 2 June 2025 Apozhidaeva talk contribs created page Sample Components (Created page with "{| class="wikitable" |+Sample Component Types !Type !Subtype !Comments |- | rowspan="4" |Bio Macromolecule |Protein | |- |Nucleic Acid - DNA | |- |Nucleic Acid - RNA | |- |Carbohydrate | |- | rowspan="3" |Small molecules |Metabolite | |- |Natural Product | |- |Other organic | |- |Chemical Formula |Chemical Formula | |- |Polymer |Polymer | |- | rowspan="2" |Mixtures |Biological Material | |- |Environmental Sample | |- | rowspan="5" |Components |Solvent System | |- |Buffer...") Tag: Visual edit
• 18:01, 2 June 2025 Mmaciejewski talk contribs created page NDTS Daemon Configuration (Created page with "<span style="display:inline-block; margin-bottom:1em;">← Back to NAN Data Transport System Overview</span> = Configuring the Daemon = After installing the Daemon on a spectrometer workstation, configuration is required to define how experiments are detected, how metadata is applied, and how data is routed to the Gateway. == '''Daemon Configuration File''' == The configuration file is located at: <pre>/etc/data-transport/daemon/config.ya...")
• 17:50, 2 June 2025 Mmaciejewski talk contribs created page Download Software (Created page with "coming soon") Tag: Visual edit: Switched
• 17:47, 2 June 2025 Mmaciejewski talk contribs created page NDTS Installation (Created page with "= Installing and Updating Daemon and Gateway = This page explains how to install, update, uninstall, and roll back the two local NDTS components: * The '''Daemon''' – installed on each spectrometer workstation * The '''Gateway''' – installed on a facility-level server These components are responsible for harvesting experiment data and transferring it securely to the NAN Repository. == '''Acquiring Installation Packages''' == Installation packages are provided as `...") Tag: Visual edit: Switched
• 16:04, 2 June 2025 Mmaciejewski talk contribs created page File:Spectrometer-edit.png
• 16:04, 2 June 2025 Mmaciejewski talk contribs uploaded File:Spectrometer-edit.png
• 16:02, 2 June 2025 Mmaciejewski talk contribs created page File:Probe-channels.png
• 16:02, 2 June 2025 Mmaciejewski talk contribs uploaded File:Probe-channels.png
• 15:59, 2 June 2025 Mmaciejewski talk contribs created page File:Add-probe.png
• 15:59, 2 June 2025 Mmaciejewski talk contribs uploaded File:Add-probe.png
• 15:50, 2 June 2025 Mmaciejewski talk contribs created page Probes (Created page with "<span style="display:inline-block; margin-bottom:1em;">← Back to Facility Dashboards</span> == '''Adding and Editing Probes''' == Facility staff can add or edit probes through the Facility Dashboard. Each probe entry is divided into several sections: Basic Information, Operating Temperature Range, and Channels. Channels can include individual nuclei or broadband ranges. === '''Basic Information''' === {| class="wikitable" ! Field !! Descripti...") Tag: Visual edit: Switched
• 15:25, 2 June 2025 Mmaciejewski talk contribs created page Spectrometers (Created page with "<span style="display:inline-block; margin-bottom:1em;">← Back to Facility Dashboards</span> == '''Adding and Editing Spectrometers''' == Facility staff can add or edit spectrometers through the Facility Dashboard. Each spectrometer entry is divided into several sections: Basic Information, Magnet Information, Console Information, Workstation Information, NMR Software, and Add-On Software Features. === '''Basic Information''' === {| class="wik...")
• 14:56, 2 June 2025 Mmaciejewski talk contribs created page Facility Information (Created page with "= Facility Information Page = The '''Facility Information''' page on the NAN portal enables facility managers, staff, and directors to manage and publish details about their NMR facility and instruments. This page acts as a content management interface, and all designated staff members have permission to edit facility-related content across the Facility Dashboard. == '''Overview''' == The Facility Information page is used to populate the facility and instrument section...") Tag: Visual edit: Switched
• 14:26, 2 June 2025 Mmaciejewski talk contribs created page User Roles and Permissions (Created page with "= User Roles in the NAN Portal = This page describes the different user roles within the NAN portal, including what each role can access and do. User roles determine the level of access and available actions within the system. == '''Public User''' == A user who is not authenticated with an NMRhub account. They have view-only access to: * The '''Resource Connector''' (lists facilities, instruments, configurations, searchable by services) * The '''Knowledgebase''' (intr...")
• 19:20, 30 May 2025 Apozhidaeva talk contribs created page File:Customization Tools.png
• 19:20, 30 May 2025 Apozhidaeva talk contribs uploaded File:Customization Tools.png
• 17:23, 30 May 2025 Apozhidaeva talk contribs created page Sample Columns (Created page with "{| class="wikitable" |- ! Column Title !! Filter Type !! Desription |- | Last Edit Date || Example || Example |- | Active || Example || Example |- | Preparation Date || Example || Example |- | Tags || Example || Example |- | Physical State, displayed as State || Example || Example |- | Container Type, displayed as a Container || Example || Example |- | Rotor size, displayed as Size || Example || Example |- | Container Label, displayed as Label || Example || Example |- |...")