← Back to Sample Columns
← Back to Creating/Cloning Samples
The first table lists possible sample components, while the following tables provide details that can be documented for major component types (e.g., proteins, polymers, biological mixtures).
Sample Component Types
| Type
|
Subtype
|
Comments
|
| Bio Macromolecule
|
Protein
|
|
| Nucleic Acid - DNA
|
Deoxyribonucleic acid samples
|
| Nucleic Acid - RNA
|
Ribonucleic acid samples
|
| Carbohydrate
|
Sugar molecules and polysaccharides
|
| Small molecules
|
Metabolite
|
Small bioactive molecules involved in metabolism
|
| Natural Product
|
Compounds isolated from natural sources
|
| Other organic
|
Organic compounds not classified elsewhere
|
| Chemical Formula
|
Chemical Formula
|
Explicit formula-based representation of a compound
|
| Polymer
|
Polymer
|
Synthetic or natural long-chain molecular compounds
|
| Mixtures
|
Biological Material
|
Mixed biological content such as tissue extracts
|
| Environmental Sample
|
Samples derived from environmental sources
|
| Components
|
Solvent System
|
|
| Buffer
|
|
| Salt
|
|
| Internal Standard
|
|
| Indirect Referencing Standard
|
|
| Additives
|
Detergent
|
|
| Lipid
|
|
| Micelle
|
|
| Bicelle
|
|
| Nano-disk
|
|
| Stretched or Compressed Gell
|
|
| Excipient
|
|
| Polarizing Agent
|
|
| Paramagnetic compound
|
|
| Other
|
Other
|
Any sample not classified in the above categories
|
Protein Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the protein
|
| Purity (%)
|
Estimated percentage purity of the sample (e.g., from SDS-PAGE or gel filtration)
|
| Uniport ID
|
Accession ID linking the protein to the UniProt database.
|
| Number of subunits
|
How many subunits
|
| AA Sequence
|
Exact sequence of construct in the NMR tube (including any uncleaved tags or additional amino acids)
|
| Protein conformational state
|
Specify if the protein is globular, membrane, fibril or disordered
|
| Monomer/Homo-Oligomer
|
Indicate if the protein exists as a monomer or homo-oligomer; if oligomeric, specify whether it is symmetric or asymmetric.
|
| Modification
|
Users can document modifications type, location in the amino acid sequence, and an optional description. While a list of common modification types is provided, custom types may also be entered.
Suggested modification types:
- Linkage - Disulfide
- Post-translation Modification
- Phosphorylation
- Acetylation
- Glycosylation
- Lipidation
- Nitrosylation
- Ubiquitination
- Non-standard AA
- Paramagnetic Tags
- Purification Tags
- N-His6
- C-His6
- N-Strep
- C-Strep
- N-GST
- C-GST
- N-Trx (Thioredoxin)
- C-Trx
|
Nucleic Acid (DNA, RNA) Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the nucleic acid
|
| Purity (%)
|
Estimated percentage purity of the sample (e.g., from SDS-PAGE)
|
| GenBank ID
|
|
| NA Sequence 5’-3’
|
Nucleic Acid Sequence (Note: Fasta format entry)
|
| Non-Standard
|
If the sequence has non-standard bases, provide a description
|
| Covalent Linkage
|
If the sequence has covalent linkage, define its type and location
|
| Modification
|
Users can document modifications type, location in the sequence, and an optional description. While a list of common modification types is provided, custom types may also be entered.
Suggested modification types:
- Linkage
- Post-translation Modification
- Phosphorylation
- Acetylation
- Glycosylation
- Lipidation
- Nitrosylation
- Ubiquitination
- Non-standard NA
- Paramagnetic Tags
- Purification Tags
- N-His6
- C-His6
- N-Strep
- C-Strep
- N-GST
- C-GST
- N-Trx (Thioredoxin)
- C-Trx
|
Carbohydrate Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the carbohydrate sample
|
| Purity (%)
|
Estimated percentage purity of the sample
|
| Classification
|
Specify type:
- Oligosaccharides
- Polysaccharides
|
| IUPAC condensed string
|
IUPAC condensed notation describing carbohydrate structure
|
| Tags
|
Additional descriptors or identifiers for the carbohydrate
|
| Modification
|
Users can document modification type and provide description. Supported types include:
- Glycopeptides
- Glycolipids
- Glycosides
|
Small Molecules/Chemical Formula Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the chemical substance
|
| Purity (%)
|
Estimated percentage purity of the sample
|
| PUBChem ID
|
Identifier from the PubChem database of chemical molecules (Compound ID number)
|
| CAS ID
|
Unique identification number assigned by the Chemical Abstracts Service (CAS)
|
| Chemical Formula
|
Enter chemical formula
|
| InChI
|
Standardized InChI identifier
|
| Class
|
Class of Material:
- Small molecule
- Polycrystalline
- Amorphous
- Zeolite
- Single Crystal
- Heterostructure
- Glass
|
| Class Description
|
Detailed description of the material class
|
Polymer Details
| Name
|
Description
|
| Tacticity
|
Define tacticity type:
- Atactic
- Eutactic
- Isotactic
- Syntactic
- Indeterminate
|
| Branching
|
Specify whether the polymer is linear or branched
|
| Source
|
Indicate whether the polymer is synthetic or biological. If biological, an option is available to enter the biological source.
|
| Weight Average Molecular Weight
|
In kDa
|
| Number Average Molecular Weight
|
In kDa
|
| Dispersity
|
|
| Polymer repeat sequence
|
User can provide following details:
- Number of Subunits
- Degree of substitution
- Length of repeated sequence
- Sequence order
- Total number of repeats
|
| Description
|
Additional notes or information about the polymer
|
| Polymer subunit
|
User has an option to add one or more polymer subunits. Following details can be provided:
- Abbreviation
- Full Name
- Chemical Formula
- Subunit molecular weight (Da)
|
Biological Material Details
| Source Organism
|
Organism from which the material is derived (e.g., Human, Mouse, E. coli). User-defined values are also allowed.
|
| Biological sample type
|
Type of biological material. Options include:
- Serum
- Urine
- Whole Blood
- Cell Extract
- Tissue
|
| Sample Category
|
Defines the role of the sample in the study. Options include:
- Study Sample
- Buffer Bank,
- Extraction Bank
- Internal QC
- External QC
|
| Local Sample ID
|
Identifier assigned to the sample within a multi-sample experiment
|
| Extraction
|
Indicates whether the sample was extracted. If yes, methods include:
- Methanol:water 80:20%
- 100% Methanol
- 100% water
- 100% isopropanol
- 100% DMSO
- Chloroform:methanol (2:1)
- Other
- None
|
| Description
|
Additional notes or information about the biological material
|
Environmental Sample Details
| Name
|
Description
|
| Source Location
|
Physical origin of the sample (e.g., river, soil)
|
| Source Class/Material
|
Type of material collected
|
| Geo Location
|
Geographic coordinates or descriptive location
|
| Sample Category
|
Defines the role of the sample in the study
|
| Local Sample ID
|
Identifier assigned to the sample within a multi-sample experiment
|
| Extraction
|
Indicates whether the sample was extracted. If yes, user can specify the extraction method
|
| Description
|
Additional notes or information about the environmental sample
|