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Sample Component Types
| Type
|
Subtype
|
Comments
|
| Bio Macromolecule
|
Protein
|
|
| Nucleic Acid - DNA
|
Deoxyribonucleic acid samples
|
| Nucleic Acid - RNA
|
Ribonucleic acid samples
|
| Carbohydrate
|
Sugar molecules and polysaccharides
|
| Small molecules
|
Metabolite
|
Small bioactive molecules involved in metabolism
|
| Natural Product
|
Compounds isolated from natural sources
|
| Other organic
|
Organic compounds not classified elsewhere
|
| Chemical Formula
|
Chemical Formula
|
Explicit formula-based representation of a compound
|
| Polymer
|
Polymer
|
Synthetic or natural long-chain molecular compounds
|
| Mixtures
|
Biological Material
|
Mixed biological content such as tissue extracts
|
| Environmental Sample
|
Samples derived from environmental sources
|
| Components
|
Solvent System
|
|
| Buffer
|
|
| Salt
|
|
| Internal Standard
|
|
| Indirect Referencing Standard
|
|
| Additives
|
Detergent
|
|
| Lipid
|
|
| Micelle
|
|
| Bicelle
|
|
| Nano-disk
|
|
| Stretched or Compressed Gell
|
|
| Excipient
|
|
| Polarizing Agent
|
|
| Paramagnetic compound
|
|
| Other
|
Other
|
Any sample not classified in the above categories
|
Protein Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the protein
|
| Purity (%)
|
Estimated percentage purity of the sample (e.g., from SDS-PAGE or gel filtration)
|
| Uniport ID
|
Accession ID linking the protein to the UniProt database.
|
| Number of subunits
|
How many subunits
|
| AA Sequence
|
Exact sequence of construct in the NMR tube (including any uncleaved tags or additional amino acids)
|
| Protein conformational state
|
Specify if the protein is globular, membrane, fibril or disordered
|
| Monomer/Homo-Oligomer
|
Indicate if the protein exists as a monomer or homo-oligomer; if oligomeric, specify whether it is symmetric or asymmetric.
|
| Modification
|
Users can document modifications type, location in the amino acid sequence, and an optional description. While a list of common modification types is provided, custom types may also be entered.
Suggested modification types:
- Linkage - Disulfide
- Post-translation Modification
- Phosphorylation
- Acetylation
- Glycosylation
- Lipidation
- Nitrosylation
- Ubiquitination
- Non-standard AA
- Paramagnetic Tags
- Purification Tags
- N-His6
- C-His6
- N-Strep
- C-Strep
- N-GST
- C-GST
- N-Trx (Thioredoxin)
- C-Trx
|
Nucleic Acid (DNA, RNA) Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the nucleic acid
|
| Purity (%)
|
Estimated percentage purity of the sample (e.g., from SDS-PAGE)
|
| GenBank ID
|
|
| NA Sequence 5’-3’
|
Nucleic Acid Sequence (Note: Fasta format entry)
|
| Non-Standard
|
If the sequence has non-standard bases, provide a description
|
| Covalent Linkage
|
If the sequence has covalent linkage, define its type and location
|
| Modification
|
Users can document modifications type, location in the sequence, and an optional description. While a list of common modification types is provided, custom types may also be entered.
Suggested modification types:
- Linkage
- Post-translation Modification
- Phosphorylation
- Acetylation
- Glycosylation
- Lipidation
- Nitrosylation
- Ubiquitination
- Non-standard NA
- Paramagnetic Tags
- Purification Tags
- N-His6
- C-His6
- N-Strep
- C-Strep
- N-GST
- C-GST
- N-Trx (Thioredoxin)
- C-Trx
|
Carbohydrate details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the carbohydrate sample
|
| Purity (%)
|
Estimated percentage purity of the sample
|
| Classification
|
Specify type:
- Oligosaccharides
- Polysaccharides
|
| IUPAC condensed string
|
IUPAC condensed notation describing carbohydrate structure
|
| Tags
|
Additional descriptors or identifiers for the carbohydrate
|
| Modification
|
Users can document modification type and provide description. Supported types include:
- Glycopeptides
- Glycolipids
- Glycosides
|
Small molecules/Chemical Formula Details
| Name
|
Description
|
| Molecular Weight
|
Molecular weight of the chemical substance
|
| Purity (%)
|
Estimated percentage purity of the sample
|
| PUBChem ID
|
Identifier from the PubChem database of chemical molecules (Compound ID number)
|
| CAS ID
|
Unique identification number assigned by the Chemical Abstracts Service (CAS)
|
| Chemical Formula
|
Enter chemical formula
|
| InChI
|
Standardized InChI identifier
|
| Class
|
Class of Material:
- Small molecule
- Polycrystalline
- Amorphous
- Zeolite
- Single Crystal
- Heterostructure
- Glass
|
| Class Description
|
Detailed description of the material class
|
Polymer Details
| Name
|
Description
|
| Tacticity
|
Define tacticity type:
- Atactic
- Eutactic
- Isotactic
- Syntactic
- Indeterminate
|
| Branching
|
Specify whether the polymer is linear or branched
|
| Source
|
Indicate whether the polymer is synthetic or biological. If biological, an option is available to enter the biological source.
|
| Weight Average Molecular Weight
|
In kDa
|
| Number Average Molecular Weight
|
In kDa
|
| Dispersity
|
|
| Polymer repeat sequence
|
User can provide following details:
- Number of Subunits
- Degree of substitution
- Length of repeated sequence
- Sequence order
- Total number of repeats
|
| Description
|
Additional notes or information about the polymer
|
| Polymer subunit
|
User has an option to add one or more polymer subunits. Following details can be provided:
- Abbreviation
- Full Name
- Chemical Formula
- Subunit molecular weight (Da)
|
Biological Material Details
| Source Organism
|
Organism from which the material is derived (e.g., Human, Mouse, E. coli). User-defined values are also allowed.
|
| Biological sample type
|
Type of biological material. Options include:
- Serum
- Urine
- Whole Blood
- Cell Extract
- Tissue
|
| Sample Category
|
Defines the role of the sample in the study. Options include:
- Study Sample
- Buffer Bank,
- Extraction Bank
- Internal QC
- External QC
|
| Local Sample ID
|
Identifier assigned to the sample within a multi-sample experiment
|
| Extraction
|
Indicates whether the sample was extracted. If yes, methods include:
- Methanol:water 80:20%
- 100% Methanol
- 100% water
- 100% isopropanol
- 100% DMSO
- Chloroform:methanol (2:1)
- Other
- None
|
| Description
|
Additional notes or information about the biological material
|
Environmental Sample Details
| Name
|
Description
|
| Source Location
|
Physical origin of the sample (e.g., river, soil)
|
| Source Class/Material
|
Type of material collected
|
| Geo Location
|
Geographic coordinates or descriptive location
|
| Sample Category
|
Defines the role of the sample in the study
|
| Local Sample ID
|
Identifier assigned to the sample within a multi-sample experiment
|
| Extraction
|
Indicates whether the sample was extracted. If yes, user can specify the extraction method
|
| Description
|
Additional notes or information about the environmental sample
|