Knowledgebase Datasets
Overview
Knowledgebase (KB) Datasets are exemplar experimental datasets collected on test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.
Contents of a KB Dataset
- Pulse programs
- Parameter files
- Waveform files
- Time-domain data
- Sample metadata
- Protocols
- Sample preparation
- Instrument setup
- Experiment setup
- Data processing
- Data analysis
- Processing scripts
- Processed data
Access
KB Datasets are publicly available to all users, whether logged in or not, from the NAN Dataset Browser.
- For non-authenticated users: navigate to Public Datasets from the Resource Connector. Then select Knowledgebase Datasets from the left-hand navigation bar.
- For authenticated users: navigate to Data Browsers → Datasets, then select Knowledgebase Datasets from the left-hand navigation bar.
Datasets may be explored from the Dataset Browser and downloaded via the context menu (right mouse click).
KB Datasets are grouped into four main categories:
- Bio Solids
- Materials Solids
- Bio Solution
- Metabolomics
Each category is subdivided up to two additional levels. Selecting a higher-level entry in the hierarchy displays all datasets beneath it, enabling intuitive exploration.
Sorting and Filtering
Columns in the Dataset Browser are sortable. Authenticated users may customize which columns are shown; non-authenticated users are presented with a standard set.
You may also filter on the KB column from the All Datasets or All Public Datasets views to locate KB Datasets.
| High-Level Category | Category | Sub-Category |
|---|---|---|
| Bio Solids | Assignment | Basic 1D Experiments |
| Bio Solids | Assignment | Resolution Enhancement |
| Bio Solids | Assignment | Homonuclear |
| Bio Solids | Assignment | Heteronuclear |
| Bio Solids | Structure | Distance restraints |
| Bio Solids | Dynamics | 15N Relaxation |
| Bio Solids | Dynamics | 2H quadrupolar line shape |
| Material Solids | High-Gamma | Basic 1D Experiments |
| Material Solids | High-Gamma | Resolution Enhancement |
| Material Solids | High-Gamma | Homonuclear |
| Material Solids | High-Gamma | Heteronuclear |
| Material Solids | Spin-1/2 | Basic 1D Experiments |
| Material Solids | Spin-1/2 | Resolution Enhancement |
| Material Solids | Spin-1/2 | Homonuclear |
| Material Solids | Spin-1/2 | Heteronuclear |
| Material Solids | Quadrupolar | Basic 1D Experiments |
| Material Solids | Quadrupolar | Resolution Enhancement |
| Material Solids | Quadrupolar | Homonuclear |
| Material Solids | Quadrupolar | Heteronuclear |
| Bio Solution | Assignment & NOE | 1D, 2D |
| Bio Solution | Assignment & NOE | 3D Sidechain, U-CN |
| Bio Solution | Assignment & NOE | 3D Backbone, U-CN |
| Bio Solution | Assignment & NOE | 3D Backbone, U-DCN |
| Bio Solution | Assignment & NOE | 3D NOESY-HSQC |
| Bio Solution | Assignment & NOE | 3D, 4D methyl-NOESY |
| Bio Solution | 13C, 15N Detection | 2D 13C-detected |
| Bio Solution | 13C, 15N Detection | 3D 13C-detected |
| Bio Solution | 13C, 15N Detection | 2D 15N-detected |
| Bio Solution | 13C, 15N Detection | 3D 15N-detected |
| Bio Solution | RDC Measurement | H-N RDC |
| Bio Solution | RDC Measurement | H-C RDC |
| Bio Solution | Backbone Dynamics & Relaxation | 15N T1/T2/HNOE HSQC |
| Bio Solution | Backbone Dynamics & Relaxation | 15N T1/T2/HNOE TROSY |
| Bio Solution | Ligand Binding | Interaction & Screening |
| Bio Solution | Ligand Binding | Quantitation |
| Bio Solution | Ligand Binding | Structure |
| Metabolomics | Profiling | 1H-1D |
| Metabolomics | Profiling | 1H-2D |
| Metabolomics | Profiling | 13C-1D |
| Metabolomics | Profiling | 13C-2D |
| Metabolomics | Compound ID | 1H-2D |
| Metabolomics | Compound ID | 13C-2D |
