Knowledgebase Datasets: Difference between revisions

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== Overview ==
== Overview ==
KB Datasets are exemplars designed to guide users through implementation of the same pulse programs on their own systems. The pulse programs are well vetted and include all the necessary files necessary to run the experiment including protocols for all aspects of experiment setup


NAN provides a suite of '''Knowledgebases (KBs)''' to help users explore how NMR can be applied to address important scientific questions. These Knowledgebases are grouped into two main types:
KB Datasets contain:
* Pulse programs
* Parameter files
* Waveform files
* Time-domain data
* Sample metadata
* Protocols
** Sample preparation
** Instrument setup
** Experiment setup
** Data processing
** Data analysis
* Processing scripts
* Processed data


* '''Novice KBs''': Designed for newcomers to NMR, these KBs introduce key applications of NMR across a broad range of scientific domains. NMR is among the most versatile tools for studying matter, and these pages showcase its wide range of uses. Information is presented in four main ways:
== Access ==
** '''Novice KB pages''': Covering a broad range of topics that illustrate the use of NMR in answering scientific questions 
The KB Datasets are Public and are available to all users (those logged in or not).
** '''Materials Periodic Table''': A solid-state focused table presenting isotope-specific novice KBs and highlighting NMR properties and applications of various nuclei in material science 
[[File:KB-dataset-menu.png|thumb|KB Dataset Navigation]]
** '''Content vignettes''': Provide fine-grained supporting information linked from KB pages
For non-authenticated users navigate to Public Datasets from the Resource Connector. Then select Knowledgebase Datasets from the navigation bar on the left hand side
** '''Literature vignettes''': Concise summaries of published studies where NMR played a central role in solving a scientific problem. These are linked from novice KBs, content vignettes, and isotope pages from the periodic table


* '''KB Datasets''': These are exemplar datasets designed to guide users through real-world NMR experiments. Each KB dataset includes:
For authenticated user navigate to the Data Browsers --> Datasets and select Knowledgebase Datasets from the navigation bar on the left hand side
** '''Pulse programs''' 
 
** '''Parameter files'''
== Navigation ==
** '''Example datasets''' 
KB Datasets are divided into four main categories:
** '''Sample metadata''' 
 
** '''Protocols'''
* Bio Solids
*** '''Sample preparation''' 
* Materials Solids
*** '''Instrument setup''' 
* Bio Solution
*** '''Experiment setup''' 
* Metabolomics
*** '''Data processing''' 
 
*** '''Data analysis''' 
Each of the four main categories are further divided into sub-categories two levels deep. This allows easy navigation across all the KB datasets. Note that highlighting a higher level in the hierarchal view will show all datasets underneath from that point.
** '''Processing scripts''' 
 
** '''Processed data'''
Sorting and Filtering
 
Each of the columns in the Dataset Browser are sortable and editable. Authenticated users may customize columns, but for non-authenticated users a defined list of columns are presented.
 
Note that from the Dataset Browser, All Datasets or All Public Datasets you may filter on the KB column to locate KB Datasets as well.

Revision as of 18:55, 17 June 2025

Overview

KB Datasets are exemplars designed to guide users through implementation of the same pulse programs on their own systems. The pulse programs are well vetted and include all the necessary files necessary to run the experiment including protocols for all aspects of experiment setup

KB Datasets contain:

  • Pulse programs
  • Parameter files
  • Waveform files
  • Time-domain data
  • Sample metadata
  • Protocols
    • Sample preparation
    • Instrument setup
    • Experiment setup
    • Data processing
    • Data analysis
  • Processing scripts
  • Processed data

Access

The KB Datasets are Public and are available to all users (those logged in or not).

KB Dataset Navigation

For non-authenticated users navigate to Public Datasets from the Resource Connector. Then select Knowledgebase Datasets from the navigation bar on the left hand side

For authenticated user navigate to the Data Browsers --> Datasets and select Knowledgebase Datasets from the navigation bar on the left hand side

Navigation

KB Datasets are divided into four main categories:

  • Bio Solids
  • Materials Solids
  • Bio Solution
  • Metabolomics

Each of the four main categories are further divided into sub-categories two levels deep. This allows easy navigation across all the KB datasets. Note that highlighting a higher level in the hierarchal view will show all datasets underneath from that point.

Sorting and Filtering

Each of the columns in the Dataset Browser are sortable and editable. Authenticated users may customize columns, but for non-authenticated users a defined list of columns are presented.

Note that from the Dataset Browser, All Datasets or All Public Datasets you may filter on the KB column to locate KB Datasets as well.

Retrieved from "https://wiki.usnan.org/index.php?title=Knowledgebase_Datasets&oldid=950"