Datasets

Datasets page of the Data Browser allows users to store, organize and share data. It is organized into

• Navigation menu (Left Panel) - enables users to efficiently locate and filter data

• Datasets table (Main Section) - displays all the datasets that the user has at least read access to.

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Navigation menu

All Datasets displays all datasets that the user has at least read access to. Depending on permissions, these may include

• User's datasets

• Datasets of other lab members

• Collaborator's data sets

Public datasets are visible as well.

My Collections contains collections created by the user that fall outside of existing projects

• Users can create multiple collections to manage datasets

Project shows all the projects that the user has at least read access to.

• Datasets can be added to “Default ProjectName Collection”, which is auto-generated
• Alternatively, the user can create studies inside the project to further organize the data

Study can only exist under a project

• Datasets can be added to “Default StudyName Collection”, which auto-generated
• Alternatively, the user can create dataset collections inside the study to further organize the data
  • the study may contain multiple dataset collections
  • the study may contain datasets that are ungrouped under a collection

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Datasets Table

The Datasets Table displays all the datasets that the user has at least read access to.

Display Name/ Dataset Name

Display Name displays user-defined experiments names. Dataset Name is the original name of the experiment as it was recorded on the spectrometer.

Display Name column

• is always visible in the Datasets Table
• is editable if the user has write access to the dataset.

Dataset Name column

• is not visible by default but can be toggled on
• is not editable

When a user downloads an experiment, it will be saved using the Dataset Name (original experiment name).

• The corresponding Display Name can be found in a CSV file located in the downloaded experiment’s folder.

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How to customize the Datasets Table view

To customize the view of the Datasets Table

1. Click on the "Wrench" Icon in the top-right corner of the table
2. Click on the "Displayed Columns" button and select which columns you want to be visible in the Datasets Table
3. Click the "Save View" button
   • The saved views can be edited and deleted
4. The user can create multiple views
   • To switch between different views click on the "Saved Views" button

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How to download experiments

To download experiments

1. Navigate to the Datasets section of the Data Browser
2. Locate the experiments you want to download
3. Click the "Checkbox" icon to select multiple experiments.
   • Alternatively, right-click on a single experiment to automatically select it
4. Right-click and select "Download" option form the context menu
5. Choose data organization format:
   • Organized for Topspin
     • If the datasets are in Bruker format you can download it structured for Topspin
     • The Topspin hierarchy of the data, including all folders/subfolders, will be preserved
   • Organized by experiment
     • Each experiment will be in a separate folder

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Quick Filters

Quick filters are views with predefined filters that users can use to quickly access filtered datasets. The user can choose one or more filters:

• Successful Datasets Only – display datasets that were classified as successful

• Hide Failed Datasets – hide datasets that were classified as failed

• Non-Redundant Datasets – display datasets that were marked as preferred

• My Data – display datasets of the logged in user

• Non-public Data – display datasets that are non-public
• KB Datasets - display datasets that were published in a knowledgebase

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