NAN Terminology: Difference between revisions

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{| class="wikitable"
{| class="wikitable"
! Term !! Definition  
! Term !! Definition !! Component
|-
|-
| '''NAN''' || Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal.  
| '''NAN''' || Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal. || Entire platform
|-
|-
| '''NDTS''' || NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository.  
| '''NDTS''' || NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository. || Data-transfer infrastructure
|-
|-
| Daemon || NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway.  
| Daemon || NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway. || NDTS
|-
|-
| Gateway || NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver.  
| Gateway || NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver. || NDTS
|-
|-
| Receiver || NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing.  
| Receiver || NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing. || NDTS
|-
|-
| Parser || NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage.  
| Parser || NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage. || NDTS
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|-
| '''Data Browser''' || Suite of dashboards (Datasets, Samples, Collections, My Permissions) for searching, filtering, and organizing experimental data.  
| '''NDTS GUI''' || Web interface for monitoring NDTS transfers, viewing logs, and configuring endpoints. || NDTS
|-
|-
| '''Resource Connector''' || Public landing area that lists NAN facilities, instruments, KBs, and other resources.  
| '''Data Browser''' || Suite of dashboards (Datasets, Samples, Collections, My Permissions) for searching, filtering, and organizing experimental data. || Portal
|-
|-
| '''Facility Dashboard''' || Privileged interface for facility staff to manage facility and instrument metadata, users, and NDTS settings.  
| Dataset Browser || Dashboard within the Data Browser focused on searching and filtering datasets. || Portal – Data Browser
|-
|-
| '''Lab Administration''' || PI-only dashboard for managing lab members, projects, funding sources, and permissions.  
| Sample Browser || Dashboard for browsing sample-level metadata and associated datasets. || Portal – Data Browser
|-
|-
| '''UHF Access''' || Online request system that allocates time on the two 1.1 GHz spectrometers through a peer-review process.  
| Collection Browser || Interface for exploring user-defined or automatic dataset collections. || Portal – Data Browser
|-
|-
| '''Knowledgebases (KBs)''' || Curated educational content (novice KBs, datasets, isotope pages, vignettes) showing how NMR solves scientific problems.  
| '''Resource Connector''' || Public landing area that lists NAN facilities, instruments, KBs, and other resources. || Portal
|-
|-
| Knowledgebase Datasets || Fully vetted experimental datasets with pulse programs, parameters, and processing scripts linked from KB pages.  
| '''Facility Dashboard''' || Privileged interface for facility staff to manage facility and instrument metadata, users, and NDTS settings. || Management dashboards
|-
|-
| Materials Periodic Table || Interactive periodic table highlighting NMR-active isotopes and their properties, with links to isotope KB content.  
| '''Lab Administration''' || PI-only dashboard for managing lab members, projects, funding sources, and permissions. || Management dashboards
|-
|-
| Vignette Library || Collection of concise summaries of published studies that used NMR, linked from KBs and isotope pages.  
| '''UHF Access''' || Online request system that allocates time on the two 1.1 GHz spectrometers through a peer-review process. || Portal
|-
|-
| '''vNOC''' || Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics.  
| '''Knowledgebases (KBs)''' || Curated educational content (novice KBs, datasets, isotope pages, vignettes) showing how NMR solves scientific problems. || Knowledgebase suite
|-
| Knowledgebase Datasets || Fully vetted experimental datasets with pulse programs, parameters, and processing scripts linked from KB pages. || Knowledgebase suite
|-
| Materials Periodic Table || Interactive periodic table highlighting NMR-active isotopes and their properties, with links to isotope KB content. || Knowledgebase suite
|-
| Vignette Library || Collection of concise summaries of published studies that used NMR, linked from KBs and isotope pages. || Knowledgebase suite
|-
| '''vNOC''' || Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics. || Operations dashboards
|-
| '''NAN Archive''' || Backend archive where NAN data reside (PostgreSQL metadata database, object storage, and disaster-recovery replicas). || Storage infrastructure
|-
| Sample || Physical or prepared material used for NMR experiments; carries metadata such as composition, tube type, and concentration. || Data model
|-
| Dataset || All raw and processed files produced by a single NMR experiment, plus associated metadata. || Data model
|-
| Published || Dataset state indicating a DOI has been minted and the record is immutable. || Data model – Publication status
|-
| Public || Access level where a dataset is visible to all visitors without authentication. || Data model – Access control
|-
| Project || Lab-level container grouping datasets, usually linked to specific funding. || Data model
|-
| Study || Sub-grouping under a project that aggregates datasets addressing a specific research question or manuscript. || Data model
|-
| Collection || User-defined or automatic grouping of datasets for presentation, sharing, or bulk download. || Data model
|-
| PI Delegate || Lab member designated by a PI to manage lab structure, datasets, and permissions with near-PI privileges. || Identity & permissions
|-
| NAN User || Authenticated account on the NAN portal with access to resources according to permissions. || Identity & permissions
|-
| NMRbox User || Legacy term for NAN User originating from the NMRbox virtual-machine service; functionally identical to NAN User. || Identity & permissions
|-
| Arbitrary Data || Files transferred via NDTS that are not recognized as standard NMR datasets; stored without parsing but tracked in metadata. || Data model / NDTS
|-
| Redundancy || Strategy of maintaining multiple synchronized copies of data (primary and DR storage) to prevent loss. || Storage infrastructure
|-
| Reassign || Portal action allowing ownership of datasets to be moved between projects or labs. || Portal – Management
|}
|}

Revision as of 14:57, 20 June 2025

Term Definition Component
NAN Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal. Entire platform
NDTS NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository. Data-transfer infrastructure
Daemon NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway. NDTS
Gateway NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver. NDTS
Receiver NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing. NDTS
Parser NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage. NDTS
NDTS GUI Web interface for monitoring NDTS transfers, viewing logs, and configuring endpoints. NDTS
Data Browser Suite of dashboards (Datasets, Samples, Collections, My Permissions) for searching, filtering, and organizing experimental data. Portal
Dataset Browser Dashboard within the Data Browser focused on searching and filtering datasets. Portal – Data Browser
Sample Browser Dashboard for browsing sample-level metadata and associated datasets. Portal – Data Browser
Collection Browser Interface for exploring user-defined or automatic dataset collections. Portal – Data Browser
Resource Connector Public landing area that lists NAN facilities, instruments, KBs, and other resources. Portal
Facility Dashboard Privileged interface for facility staff to manage facility and instrument metadata, users, and NDTS settings. Management dashboards
Lab Administration PI-only dashboard for managing lab members, projects, funding sources, and permissions. Management dashboards
UHF Access Online request system that allocates time on the two 1.1 GHz spectrometers through a peer-review process. Portal
Knowledgebases (KBs) Curated educational content (novice KBs, datasets, isotope pages, vignettes) showing how NMR solves scientific problems. Knowledgebase suite
Knowledgebase Datasets Fully vetted experimental datasets with pulse programs, parameters, and processing scripts linked from KB pages. Knowledgebase suite
Materials Periodic Table Interactive periodic table highlighting NMR-active isotopes and their properties, with links to isotope KB content. Knowledgebase suite
Vignette Library Collection of concise summaries of published studies that used NMR, linked from KBs and isotope pages. Knowledgebase suite
vNOC Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics. Operations dashboards
NAN Archive Backend archive where NAN data reside (PostgreSQL metadata database, object storage, and disaster-recovery replicas). Storage infrastructure
Sample Physical or prepared material used for NMR experiments; carries metadata such as composition, tube type, and concentration. Data model
Dataset All raw and processed files produced by a single NMR experiment, plus associated metadata. Data model
Published Dataset state indicating a DOI has been minted and the record is immutable. Data model – Publication status
Public Access level where a dataset is visible to all visitors without authentication. Data model – Access control
Project Lab-level container grouping datasets, usually linked to specific funding. Data model
Study Sub-grouping under a project that aggregates datasets addressing a specific research question or manuscript. Data model
Collection User-defined or automatic grouping of datasets for presentation, sharing, or bulk download. Data model
PI Delegate Lab member designated by a PI to manage lab structure, datasets, and permissions with near-PI privileges. Identity & permissions
NAN User Authenticated account on the NAN portal with access to resources according to permissions. Identity & permissions
NMRbox User Legacy term for NAN User originating from the NMRbox virtual-machine service; functionally identical to NAN User. Identity & permissions
Arbitrary Data Files transferred via NDTS that are not recognized as standard NMR datasets; stored without parsing but tracked in metadata. Data model / NDTS
Redundancy Strategy of maintaining multiple synchronized copies of data (primary and DR storage) to prevent loss. Storage infrastructure
Reassign Portal action allowing ownership of datasets to be moved between projects or labs. Portal – Management
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