NAN Terminology - Revision history

Mmaciejewski at 20:30, 17 August 2025

2025-08-17T20:30:01Z

← Older revision		Revision as of 20:30, 17 August 2025
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	\| '''Receiver''' \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing \|\| NDTS		\| '''Receiver''' \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing \|\| NDTS
	\|-		\|-
	\| '''Reassign''' \|\| Dataset Browser action allowing the ~~dataset~~ PI and/or associated NAN user to be changed \|\| Data Browser		\| '''Reassign''' \|\| Dataset Browser action allowing the PI and/or associated NAN user to be changed for selected datasets \|\| Data Browser
	\|-		\|-
	\| '''Redundancy''' \|\| Status of a dataset with an identical name collected within the same Session that is not the Preferred dataset \|\| Storage infrastructure		\| '''Redundancy''' \|\| Status of a dataset with an identical name collected within the same Session that is not the Preferred dataset \|\| Storage infrastructure

Mmaciejewski at 20:28, 17 August 2025

2025-08-17T20:28:03Z

← Older revision		Revision as of 20:28, 17 August 2025
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	\| '''Public''' \|\| Access level where a dataset is visible to all visitors without authentication \|\| Data Browser		\| '''Public''' \|\| Access level where a dataset is visible to all visitors without authentication \|\| Data Browser
	\|-		\|-
	\| '''Published''' \|\| Published datasets are copied versions of datasets that are immutable, have a persistent ARK identifier that can be used for publications, are version controlled, and are linked to the parent dataset and previous published versions \|\| Data Browser		\| '''Published''' \|\| Published datasets are copied versions of datasets that are immutable, have a persistent ARK identifier that can be used for publications, are version controlled, and are linked to the parent dataset and previous published versions. Published collections provide an additional persistent ARK identifier to the collection. \|\| Data Browser
	\|-		\|-
	\| '''Receiver''' \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing \|\| NDTS		\| '''Receiver''' \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing \|\| NDTS
	\|-		\|-
	\| '''Reassign''' \|\| Dataset Browser action allowing ~~ownership of datasets~~ to be changed \|\| Data Browser		\| '''Reassign''' \|\| Dataset Browser action allowing the dataset PI and/or associated NAN user to be changed \|\| Data Browser
	\|-		\|-
	\| '''Redundancy''' \|\| Status of a dataset with an identical name collected within the same Session that is not the Preferred dataset \|\| Storage infrastructure		\| '''Redundancy''' \|\| Status of a dataset with an identical name collected within the same Session that is not the Preferred dataset \|\| Storage infrastructure

Mmaciejewski at 15:25, 23 June 2025

2025-06-23T15:25:52Z

← Older revision		Revision as of 15:25, 23 June 2025
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	\|-		\|-
	\| '''UHF Request''' \|\| Online request system for users to request access to the 1.1 GHz spectrometers through a peer-review process \|\| UHF Access		\| '''UHF Request''' \|\| Online request system for users to request access to the 1.1 GHz spectrometers through a peer-review process \|\| UHF Access
			\|-
			\|'''Unspecified User'''
			\|A dataset harvested without an associated to a NAN user is said to be unspecified. Facility managers can set the default NDTS harvesting settings for unspecified users.
			\|NDTS
	\|-		\|-
	\| '''vNOC''' \|\| Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics \|\| vNOC		\| '''vNOC''' \|\| Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics \|\| vNOC

Mmaciejewski at 15:33, 20 June 2025

2025-06-20T15:33:36Z

@@ Line 39: / Line 39: @@
 |-
 | '''NMRbox User''' || Authenticated account on the NMRbox platform with access to resources according to permissions. There is no difference between a NAN user, a NMRbox user, or a NMRhub user - they are terms for the same account || Identity & permissions
 |-
 | '''Parser''' || NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage || NDTS
 |-
 | '''PI Delegate''' || Lab member designated by a PI to perform actions as the PI to manage Projects, users and Lab permissions || Lab Administration
 |-
 | '''Project''' || Lab-level container grouping datasets and samples, with the ability to link funding || Data Browser
@@ Line 61: / Line 69: @@
 |-
 | '''Sample Browser''' || Dashboard for browsing sample-level metadata and associated datasets. || Portal – Data Browser
 |-
 | '''Study''' || Sub-grouping under a project that aggregates datasets addressing a specific research question or manuscript || Data model
@@ Line 69: / Line 81: @@
 |-
 | '''Vignette Library''' || Collection of concise summaries of published studies that utilized NMR || Knowledgebases
 |}

Mmaciejewski at 15:31, 20 June 2025

2025-06-20T15:31:56Z

← Older revision		Revision as of 15:31, 20 June 2025
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	\|Identity		\|Identity
	\|-		\|-
	\|Preferred Dataset		\|'''Preferred Dataset'''
	\|A dataset from a collection of redundant datasets that is marked as the Preferred dataset. Generally, it is the most recently collected dataset of the redundant collection, but is selectable by the user		\|A dataset from a collection of redundant datasets that is marked as the Preferred dataset. Generally, it is the most recently collected dataset of the redundant collection, but is selectable by the user
	\|Data Browser		\|Data Browser
	\|}		\|}

Mmaciejewski at 15:31, 20 June 2025

2025-06-20T15:31:24Z

Show changes

Mmaciejewski at 15:02, 20 June 2025

2025-06-20T15:02:28Z

Show changes

Mmaciejewski at 14:57, 20 June 2025

2025-06-20T14:57:57Z

← Older revision		Revision as of 14:57, 20 June 2025
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	{\| class="wikitable"		{\| class="wikitable"
	! Term !! Definition		! Term !! Definition !! Component
	\|-		\|-
	\| '''NAN''' \|\| Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal.		\| '''NAN''' \|\| Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal. \|\| Entire platform
	\|-		\|-
	\| '''NDTS''' \|\| NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository.		\| '''NDTS''' \|\| NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository. \|\| Data-transfer infrastructure
	\|-		\|-
	\| Daemon \|\| NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway.		\| Daemon \|\| NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway. \|\| NDTS
	\|-		\|-
	\| Gateway \|\| NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver.		\| Gateway \|\| NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver. \|\| NDTS
	\|-		\|-
	\| Receiver \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing.		\| Receiver \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing. \|\| NDTS
	\|-		\|-
	\| Parser \|\| NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage.		\| Parser \|\| NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage. \|\| NDTS
	\|-		\|-
	\| '''~~Data Browser~~''' \|\| ~~Suite of dashboards (Datasets, Samples, Collections, My Permissions)~~ for ~~searching~~, ~~filtering~~, and ~~organizing experimental data~~.		\| '''NDTS GUI''' \|\| Web interface for monitoring NDTS transfers, viewing logs, and configuring endpoints. \|\| NDTS
	\|-		\|-
	\| '''~~Resource Connector~~''' \|\| ~~Public landing area that lists NAN facilities~~, ~~instruments~~, ~~KBs~~, and ~~other resources~~.		\| '''Data Browser''' \|\| Suite of dashboards (Datasets, Samples, Collections, My Permissions) for searching, filtering, and organizing experimental data. \|\| Portal
	\|-		\|-
	\| ~~'''Facility Dashboard'''~~ \|\| ~~Privileged interface for facility staff to manage facility~~ and ~~instrument metadata, users, and NDTS settings~~.		\| Dataset Browser \|\| Dashboard within the Data Browser focused on searching and filtering datasets. \|\| Portal – Data Browser
	\|-		\|-
	\| ~~'''Lab Administration'''~~ \|\| PI-~~only dashboard for managing lab members, projects, funding sources,~~ and ~~permissions~~.		\| Sample Browser \|\| Dashboard for browsing sample-level metadata and associated datasets. \|\| Portal – Data Browser
	\|-		\|-
	\| ~~'''UHF Access'''~~ \|\| ~~Online request system that allocates time on the two 1.1 GHz spectrometers through a peer~~-~~review process~~.		\| Collection Browser \|\| Interface for exploring user-defined or automatic dataset collections. \|\| Portal – Data Browser
	\|-		\|-
	\| '''~~Knowledgebases (KBs)~~''' \|\| ~~Curated educational content (novice KBs~~, ~~datasets~~, ~~isotope pages~~, ~~vignettes) showing how NMR solves scientific problems~~.		\| '''Resource Connector''' \|\| Public landing area that lists NAN facilities, instruments, KBs, and other resources. \|\| Portal
	\|-		\|-
	\| ~~Knowledgebase Datasets~~ \|\| ~~Fully vetted experimental datasets with pulse programs~~, ~~parameters~~, and ~~processing scripts linked from KB pages~~.		\| '''Facility Dashboard''' \|\| Privileged interface for facility staff to manage facility and instrument metadata, users, and NDTS settings. \|\| Management dashboards
	\|-		\|-
	\| ~~Materials Periodic Table~~ \|\| ~~Interactive periodic table highlighting NMR~~-~~active isotopes~~ and ~~their properties, with links to isotope KB content~~.		\| '''Lab Administration''' \|\| PI-only dashboard for managing lab members, projects, funding sources, and permissions. \|\| Management dashboards
	\|-		\|-
	\| ~~Vignette Library~~ \|\| ~~Collection of concise summaries of published studies~~ that ~~used NMR, linked from KBs and isotope pages~~.		\| '''UHF Access''' \|\| Online request system that allocates time on the two 1.1 GHz spectrometers through a peer-review process. \|\| Portal
	\|-		\|-
	\| '''vNOC''' \|\| Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics.		\| '''Knowledgebases (KBs)''' \|\| Curated educational content (novice KBs, datasets, isotope pages, vignettes) showing how NMR solves scientific problems. \|\| Knowledgebase suite
			\|-
			\| Knowledgebase Datasets \|\| Fully vetted experimental datasets with pulse programs, parameters, and processing scripts linked from KB pages. \|\| Knowledgebase suite
			\|-
			\| Materials Periodic Table \|\| Interactive periodic table highlighting NMR-active isotopes and their properties, with links to isotope KB content. \|\| Knowledgebase suite
			\|-
			\| Vignette Library \|\| Collection of concise summaries of published studies that used NMR, linked from KBs and isotope pages. \|\| Knowledgebase suite
			\|-
			\| '''vNOC''' \|\| Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics. \|\| Operations dashboards
			\|-
			\| '''NAN Archive''' \|\| Backend archive where NAN data reside (PostgreSQL metadata database, object storage, and disaster-recovery replicas). \|\| Storage infrastructure
			\|-
			\| Sample \|\| Physical or prepared material used for NMR experiments; carries metadata such as composition, tube type, and concentration. \|\| Data model
			\|-
			\| Dataset \|\| All raw and processed files produced by a single NMR experiment, plus associated metadata. \|\| Data model
			\|-
			\| Published \|\| Dataset state indicating a DOI has been minted and the record is immutable. \|\| Data model – Publication status
			\|-
			\| Public \|\| Access level where a dataset is visible to all visitors without authentication. \|\| Data model – Access control
			\|-
			\| Project \|\| Lab-level container grouping datasets, usually linked to specific funding. \|\| Data model
			\|-
			\| Study \|\| Sub-grouping under a project that aggregates datasets addressing a specific research question or manuscript. \|\| Data model
			\|-
			\| Collection \|\| User-defined or automatic grouping of datasets for presentation, sharing, or bulk download. \|\| Data model
			\|-
			\| PI Delegate \|\| Lab member designated by a PI to manage lab structure, datasets, and permissions with near-PI privileges. \|\| Identity & permissions
			\|-
			\| NAN User \|\| Authenticated account on the NAN portal with access to resources according to permissions. \|\| Identity & permissions
			\|-
			\| NMRbox User \|\| Legacy term for NAN User originating from the NMRbox virtual-machine service; functionally identical to NAN User. \|\| Identity & permissions
			\|-
			\| Arbitrary Data \|\| Files transferred via NDTS that are not recognized as standard NMR datasets; stored without parsing but tracked in metadata. \|\| Data model / NDTS
			\|-
			\| Redundancy \|\| Strategy of maintaining multiple synchronized copies of data (primary and DR storage) to prevent loss. \|\| Storage infrastructure
			\|-
			\| Reassign \|\| Portal action allowing ownership of datasets to be moved between projects or labs. \|\| Portal – Management
	\|}		\|}

Mmaciejewski at 14:49, 20 June 2025

2025-06-20T14:49:51Z

Mmaciejewski at 14:49, 20 June 2025

2025-06-20T14:49:15Z

@@ Line 1: / Line 1: @@
 {| class="wikitable"
-|+
+! Term !! Definition !! Component
 |-
-|NAN
+| '''NAN''' || Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal. || Entire platform
 |-
-|NDTS
+| '''NDTS''' || NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository. || Data-transfer infrastructure
 |-
+| Daemon || NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway. || NDTS
+|-
+| Gateway || NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver. || NDTS
+|-
 |}

← Older revision		Revision as of 14:49, 20 June 2025
Line 1:		Line 1:
	{\| class="wikitable"		{\| class="wikitable"
	! Term !! Definition ~~!! Component~~		! Term !! Definition
	\|-		\|-
	\| '''NAN''' \|\| Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal. ~~\|\| Entire platform~~		\| '''NAN''' \|\| Network for Advanced NMR — a collaborative initiative that democratizes access to high-field NMR, provides data stewardship, and offers shared 1.1 GHz instruments via a unified web portal.
	\|-		\|-
	\| '''NDTS''' \|\| NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository. ~~\|\| Data-transfer infrastructure~~		\| '''NDTS''' \|\| NAN Data Transport System — automated pipeline (Daemon → Gateway → Receiver → Parser) that harvests spectrometer data and loads it into the central repository.
	\|-		\|-
	\| Daemon \|\| NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway. ~~\|\| NDTS~~		\| Daemon \|\| NDTS workstation process that detects finished experiments, bundles metadata, and forwards data to the Gateway.
	\|-		\|-
	\| Gateway \|\| NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver. ~~\|\| NDTS~~		\| Gateway \|\| NDTS computer inside each facility that aggregates data from Daemons and relays it to the central Receiver.
	\|-		\|-
	\| Receiver \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing. ~~\|\| NDTS~~		\| Receiver \|\| NDTS service in the UConn Health datacenter that accepts data from Gateways before parsing.
	\|-		\|-
	\| Parser \|\| NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage. ~~\|\| NDTS~~		\| Parser \|\| NDTS service that extracts metadata, writes database entries, and stores datasets to primary and disaster-recovery storage.
	\|-		\|-
	\| '''Data Browser''' \|\| Suite of dashboards (Datasets, Samples, Collections, My Permissions) for searching, filtering, and organizing experimental data. ~~\|\| Portal~~		\| '''Data Browser''' \|\| Suite of dashboards (Datasets, Samples, Collections, My Permissions) for searching, filtering, and organizing experimental data.
	\|-		\|-
	\| '''Resource Connector''' \|\| Public landing area that lists NAN facilities, instruments, KBs, and other resources. ~~\|\| Portal~~		\| '''Resource Connector''' \|\| Public landing area that lists NAN facilities, instruments, KBs, and other resources.
	\|-		\|-
	\| '''Facility Dashboard''' \|\| Privileged interface for facility staff to manage facility and instrument metadata, users, and NDTS settings. ~~\|\| Management dashboards~~		\| '''Facility Dashboard''' \|\| Privileged interface for facility staff to manage facility and instrument metadata, users, and NDTS settings.
	\|-		\|-
	\| '''Lab Administration''' \|\| PI-only dashboard for managing lab members, projects, funding sources, and permissions. ~~\|\| Management dashboards~~		\| '''Lab Administration''' \|\| PI-only dashboard for managing lab members, projects, funding sources, and permissions.
	\|-		\|-
	\| '''UHF Access''' \|\| Online request system that allocates time on the two 1.1 GHz spectrometers through a peer-review process. ~~\|\| Portal~~		\| '''UHF Access''' \|\| Online request system that allocates time on the two 1.1 GHz spectrometers through a peer-review process.
	\|-		\|-
	\| '''Knowledgebases (KBs)''' \|\| Curated educational content (novice KBs, datasets, isotope pages, vignettes) showing how NMR solves scientific problems. ~~\|\| Knowledgebase suite~~		\| '''Knowledgebases (KBs)''' \|\| Curated educational content (novice KBs, datasets, isotope pages, vignettes) showing how NMR solves scientific problems.
	\|-		\|-
	\| Knowledgebase Datasets \|\| Fully vetted experimental datasets with pulse programs, parameters, and processing scripts linked from KB pages. ~~\|\| Knowledgebase suite~~		\| Knowledgebase Datasets \|\| Fully vetted experimental datasets with pulse programs, parameters, and processing scripts linked from KB pages.
	\|-		\|-
	\| Materials Periodic Table \|\| Interactive periodic table highlighting NMR-active isotopes and their properties, with links to isotope KB content. ~~\|\| Knowledgebase suite~~		\| Materials Periodic Table \|\| Interactive periodic table highlighting NMR-active isotopes and their properties, with links to isotope KB content.
	\|-		\|-
	\| Vignette Library \|\| Collection of concise summaries of published studies that used NMR, linked from KBs and isotope pages. ~~\|\| Knowledgebase suite~~		\| Vignette Library \|\| Collection of concise summaries of published studies that used NMR, linked from KBs and isotope pages.
	\|-		\|-
	\| '''vNOC''' \|\| Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics. ~~\|\| Operations dashboards~~		\| '''vNOC''' \|\| Virtual NAN Operations Center presenting real-time dashboards (public, user, PI, facility views) for network status and metrics.
	\|}		\|}