Knowledgebase Datasets - Revision history

Mmaciejewski at 15:27, 18 June 2025

2025-06-18T15:27:57Z

← Older revision		Revision as of 15:27, 18 June 2025
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			{{KB_navigation}}

	== Overview ==		== Overview ==

Mmaciejewski at 15:15, 18 June 2025

2025-06-18T15:15:19Z

← Older revision		Revision as of 15:15, 18 June 2025
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	== Access ==		== Access ==
	KB Datasets are '''publicly available''' to all users, whether logged in or not, from the NAN Dataset Browser.		KB Datasets are '''publicly available''' to all users, whether logged in or not, from the NAN Dataset Browser.
	[[File:KB-materials.png\|thumb\|KB Dataset Navigation]]		[[File:KB-materials.png\|thumb\|KB Dataset Navigation\|353x353px]]
	* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.
	* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.

Mmaciejewski: /* Navigation */

2025-06-18T15:14:39Z

Navigation

← Older revision		Revision as of 15:14, 18 June 2025
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	* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.
	Datasets may be explored from the Dataset Browser and downloaded via the context menu (right mouse click).		Datasets may be explored from the Dataset Browser and downloaded via the context menu (right mouse click).

			== Sorting and Filtering ==
			Columns in the Dataset Browser are sortable. Authenticated users may customize which columns are shown; non-authenticated users are presented with a standard set.

			You may also filter on the '''KB''' column from the '''All Datasets''' or '''All Public Datasets''' views to locate KB Datasets.

	== Navigation ==		== Navigation ==
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	Each category is subdivided up to two additional levels. Selecting a higher-level entry in the hierarchy displays all datasets beneath it, enabling intuitive exploration.		Each category is subdivided up to two additional levels. Selecting a higher-level entry in the hierarchy displays all datasets beneath it, enabling intuitive exploration.

	~~== Sorting and Filtering ==~~
	~~Columns in the Dataset Browser are sortable. Authenticated users may customize which columns are shown; non-authenticated users are presented with a standard set.~~

	~~You may also filter on the '''KB''' column from the '''All Datasets''' or '''All Public Datasets''' views to locate KB Datasets.~~

	{\| class="wikitable"		{\| class="wikitable"
	! ~~High-Level Category~~ !! Category !! Sub-Categories		! KB Names !! Category !! Sub-Categories
	\|-		\|-
	\| rowspan="3" \| Bio Solids \|\| Assignment \|\|		\| rowspan="3" \| Bio Solids \|\| Assignment \|\|

Mmaciejewski at 15:12, 18 June 2025

2025-06-18T15:12:41Z

Show changes

Mmaciejewski at 15:11, 18 June 2025

2025-06-18T15:11:02Z

← Older revision		Revision as of 15:11, 18 June 2025
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	You may also filter on the '''KB''' column from the '''All Datasets''' or '''All Public Datasets''' views to locate KB Datasets.		You may also filter on the '''KB''' column from the '''All Datasets''' or '''All Public Datasets''' views to locate KB Datasets.

			{\| class="wikitable sortable"
			! High-Level Category !! Category !! Sub-Category
			\|-
			\| Bio Solids \|\| Assignment \|\| Basic 1D Experiments
			\|-
			\| Bio Solids \|\| Assignment \|\| Resolution Enhancement
			\|-
			\| Bio Solids \|\| Assignment \|\| Homonuclear
			\|-
			\| Bio Solids \|\| Assignment \|\| Heteronuclear
			\|-
			\| Bio Solids \|\| Structure \|\| Distance restraints
			\|-
			\| Bio Solids \|\| Dynamics \|\| 15N Relaxation
			\|-
			\| Bio Solids \|\| Dynamics \|\| 2H quadrupolar line shape
			\|-
			\| Material Solids \|\| High-Gamma \|\| Basic 1D Experiments
			\|-
			\| Material Solids \|\| High-Gamma \|\| Resolution Enhancement
			\|-
			\| Material Solids \|\| High-Gamma \|\| Homonuclear
			\|-
			\| Material Solids \|\| High-Gamma \|\| Heteronuclear
			\|-
			\| Material Solids \|\| Spin-1/2 \|\| Basic 1D Experiments
			\|-
			\| Material Solids \|\| Spin-1/2 \|\| Resolution Enhancement
			\|-
			\| Material Solids \|\| Spin-1/2 \|\| Homonuclear
			\|-
			\| Material Solids \|\| Spin-1/2 \|\| Heteronuclear
			\|-
			\| Material Solids \|\| Quadrupolar \|\| Basic 1D Experiments
			\|-
			\| Material Solids \|\| Quadrupolar \|\| Resolution Enhancement
			\|-
			\| Material Solids \|\| Quadrupolar \|\| Homonuclear
			\|-
			\| Material Solids \|\| Quadrupolar \|\| Heteronuclear
			\|-
			\| Bio Solution \|\| Assignment & NOE \|\| 1D, 2D
			\|-
			\| Bio Solution \|\| Assignment & NOE \|\| 3D Sidechain, U-CN
			\|-
			\| Bio Solution \|\| Assignment & NOE \|\| 3D Backbone, U-CN
			\|-
			\| Bio Solution \|\| Assignment & NOE \|\| 3D Backbone, U-DCN
			\|-
			\| Bio Solution \|\| Assignment & NOE \|\| 3D NOESY-HSQC
			\|-
			\| Bio Solution \|\| Assignment & NOE \|\| 3D, 4D methyl-NOESY
			\|-
			\| Bio Solution \|\| 13C, 15N Detection \|\| 2D 13C-detected
			\|-
			\| Bio Solution \|\| 13C, 15N Detection \|\| 3D 13C-detected
			\|-
			\| Bio Solution \|\| 13C, 15N Detection \|\| 2D 15N-detected
			\|-
			\| Bio Solution \|\| 13C, 15N Detection \|\| 3D 15N-detected
			\|-
			\| Bio Solution \|\| RDC Measurement \|\| H-N RDC
			\|-
			\| Bio Solution \|\| RDC Measurement \|\| H-C RDC
			\|-
			\| Bio Solution \|\| Backbone Dynamics & Relaxation \|\| 15N T1/T2/HNOE HSQC
			\|-
			\| Bio Solution \|\| Backbone Dynamics & Relaxation \|\| 15N T1/T2/HNOE TROSY
			\|-
			\| Bio Solution \|\| Ligand Binding \|\| Interaction & Screening
			\|-
			\| Bio Solution \|\| Ligand Binding \|\| Quantitation
			\|-
			\| Bio Solution \|\| Ligand Binding \|\| Structure
			\|-
			\| Metabolomics \|\| Profiling \|\| 1H-1D
			\|-
			\| Metabolomics \|\| Profiling \|\| 1H-2D
			\|-
			\| Metabolomics \|\| Profiling \|\| 13C-1D
			\|-
			\| Metabolomics \|\| Profiling \|\| 13C-2D
			\|-
			\| Metabolomics \|\| Compound ID \|\| 1H-2D
			\|-
			\| Metabolomics \|\| Compound ID \|\| 13C-2D
			\|}

Mmaciejewski at 15:05, 18 June 2025

2025-06-18T15:05:53Z

← Older revision		Revision as of 15:05, 18 June 2025
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	== Overview ==		== Overview ==
			[[File:Kb-datasets.png\|thumb\|600x600px\|Knowledgebase Datasets]]
	Knowledgebase (KB) Datasets are exemplar experimental datasets collected on test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.		Knowledgebase (KB) Datasets are exemplar experimental datasets collected on test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.

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	== Access ==		== Access ==
	KB Datasets are '''publicly available''' to all users, whether logged in or not, from the NAN Dataset Browser.		KB Datasets are '''publicly available''' to all users, whether logged in or not, from the NAN Dataset Browser.
			[[File:KB-materials.png\|thumb\|KB Dataset Navigation]]
	[[File:KB-~~dataset-menu~~.png\|thumb\|KB Dataset ~~navigation~~]]

	* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.
	* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.

Mtest at 13:56, 18 June 2025

2025-06-18T13:56:07Z

← Older revision		Revision as of 13:56, 18 June 2025
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	== Access ==		== Access ==
	KB Datasets are '''publicly available''' to all users, whether logged in or not.		KB Datasets are '''publicly available''' to all users, whether logged in or not, from the NAN Dataset Browser.

	[[File:KB-dataset-menu.png\|thumb\|KB Dataset navigation]]		[[File:KB-dataset-menu.png\|thumb\|KB Dataset navigation]]
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	* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.
	* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.		* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.
			Datasets may be explored from the Dataset Browser and downloaded via the context menu (right mouse click).

	== Navigation ==		== Navigation ==

Mtest at 13:52, 18 June 2025

2025-06-18T13:52:44Z

← Older revision		Revision as of 13:52, 18 June 2025
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	Knowledgebase (KB) Datasets are exemplar experimental datasets collected on test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.		Knowledgebase (KB) Datasets are exemplar experimental datasets collected on test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.

	=== Contents of a KB Dataset ===		== Contents of a KB Dataset ==
	* '''Pulse programs'''		* '''Pulse programs'''
	* '''Parameter files'''		* '''Parameter files'''

Mtest at 13:52, 18 June 2025

2025-06-18T13:52:29Z

@@ Line 1: / Line 1: @@
 == Overview ==
-Knowledgebase (KB) Datasets are exemplar experimental datasets collected on standardized test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.
+Knowledgebase (KB) Datasets are exemplar experimental datasets collected on test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.
 === Contents of a KB Dataset ===

Mtest at 13:50, 18 June 2025

2025-06-18T13:50:06Z

← Older revision		Revision as of 13:50, 18 June 2025
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	Note that from the Dataset Browser, All Datasets or All Public Datasets you may filter on the KB column to locate KB Datasets as well.		Note that from the Dataset Browser, All Datasets or All Public Datasets you may filter on the KB column to locate KB Datasets as well.


			== Overview ==
			Knowledgebase (KB) Datasets are exemplar experimental datasets collected on standardized test samples at high- and ultra-high magnetic fields. Each dataset provides a vetted pulse program along with all required files to reproduce the experiment and adapt it to other instruments or research samples.

			=== Contents of a KB Dataset ===
			* '''Pulse programs'''
			* '''Parameter files'''
			* '''Waveform files'''
			* '''Time-domain data'''
			* '''Sample metadata'''
			* '''Protocols'''
			** Sample preparation
			** Instrument setup
			** Experiment setup
			** Data processing
			** Data analysis
			* '''Processing scripts'''
			* '''Processed data'''

			== Access ==
			KB Datasets are '''publicly available''' to all users, whether logged in or not.

			[[File:KB-dataset-menu.png\|thumb\|KB Dataset navigation]]

			* For non-authenticated users: navigate to '''Public Datasets''' from the '''Resource Connector'''. Then select '''Knowledgebase Datasets''' from the left-hand navigation bar.
			* For authenticated users: navigate to '''Data Browsers → Datasets''', then select '''Knowledgebase Datasets''' from the left-hand navigation bar.

			== Navigation ==
			KB Datasets are grouped into four main categories:

			* Bio Solids
			* Materials Solids
			* Bio Solution
			* Metabolomics

			Each category is subdivided up to two additional levels. Selecting a higher-level entry in the hierarchy displays all datasets beneath it, enabling intuitive exploration.

			== Sorting and Filtering ==
			Columns in the Dataset Browser are sortable. Authenticated users may customize which columns are shown; non-authenticated users are presented with a standard set.

			You may also filter on the '''KB''' column from the '''All Datasets''' or '''All Public Datasets''' views to locate KB Datasets.