Feature Summary - Revision history

Mmaciejewski: /* Facility Management (viewable by Facility managers and staff) */

2025-07-31T20:15:37Z

Facility Management (viewable by Facility managers and staff)

← Older revision		Revision as of 20:15, 31 July 2025
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			Note that the certain features on NAN are restricted based on [[User Roles and Permissions\|User Roles and Permissions.]]

	== '''Knowledgebase (KB) Learning Resources''' ==		== '''Knowledgebase (KB) Learning Resources''' ==
	* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.		* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.
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	* '''PI Delegate''' – PI delegates act on behalf of the PI reducing administrative burden.		* '''PI Delegate''' – PI delegates act on behalf of the PI reducing administrative burden.

	== '''Facility Management''' (~~viewable~~ by Facility ~~managers and~~ staff) ==		== '''Facility Management''' (only accessible by Facility staff with roles of Director, Administrator, or Facility Manager) ==
	* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.		* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.
	* '''User Management''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.		* '''User Management''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.
	* '''~~Full~~ Access to Data''' – Facility ~~managers~~ act as stewards of datasets collected in their facility and have the privileges to view, reassign, and purge data.		* '''Access to Data''' – Facility Managers, Directors, and Administrators act as stewards of datasets collected in their facility and have the privileges to view, reassign, and purge data.
	* '''NDTS''' '''Software''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.		* '''NDTS''' '''Software''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.

Mtest at 16:29, 29 July 2025

2025-07-29T16:29:47Z

Mmaciejewski: /* Virtual Network Operations Center (vNOC) */

2025-07-09T20:28:09Z

Virtual Network Operations Center (vNOC)

← Older revision		Revision as of 20:28, 9 July 2025
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	* '''NDTS''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.		* '''NDTS''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.

	== '''~~Virtual~~ Network Operations Center (vNOC)''' ==		== '''virtual Network Operations Center (vNOC)''' ==
	* Role-based dashboards with increasing scope:		* Role-based dashboards with increasing scope:
	** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.		** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.

Mmaciejewski at 20:27, 9 July 2025

2025-07-09T20:27:51Z

Mmaciejewski: Created page with "'''== Knowledgebase (KB) Learning Resources ==''' * '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples. * '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and p..."

2025-07-09T20:26:06Z

Created page with "'''== Knowledgebase (KB) Learning Resources ==''' * '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples. * '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and p..."

New page

'''== Knowledgebase (KB) Learning Resources =='''
* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.
* '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and processed data.
* '''Vignette library''' – Community-driven summaries of peer-reviewed NMR studies showcasing real-world applications.
* '''Materials Periodic Table''' – Interactive periodic table to explore the feasibility of utilizing NMR in materials science.

'''== Facilities and Instruments =='''
* '''Ultra-High-Field (UHF) NMR spectrometers''' – Open-access to two 1.1 GHz NMR instruments: one for solids (NMRFAM), one for solutions (CCRC)
* '''Facilities''' – Views of all facilities connected to the NAN network and the services which they provide
* '''Instruments''' – Filterable and sortable tables that list all spectrometers, and probes, connected to the NAN network
* '''UHF access request system''' – Structured, review-based workflow to request access to NAN’s two 1.1 GHz spectrometers and other UHF assets that choose to utilize the UHF request system.

'''== Data Transport & Management =='''
* '''NDTS (NAN Data Transport System)''' – automated pipeline that harvests raw experiment data from spectrometer workstations to the central archive with rich metadata linking (facility, spectrometer, probe, user, project, study, sample, experimental parameters, etc.).
* '''Secure archival''' – NAN harvested datasets are stored on an enterprise-class network attached storage device and backed up to a geo-dispersed WORM enabled S3 bucket with high data durability. The NAN database is replicated across two datacenters and backed up daily.
* '''Data Browsers''' – Suite of tables for viewing and managing '''datasets''', '''samples''', and '''collections'''. Tables are customizable and each column may be filtered and sorted allowing for powerful queries. Standard and user-defined filters provide quick access to common views. A context menu allows easy access to actions.
* '''Actions''' – Actions allow datasets to be viewed/edited, reassigned, downloaded, pushed to NMRbox, linked to samples, and annotated with classifications, tags, and notes. Actions work with multi-select for efficiency.
* '''Supplemental data''' – Supplemental data may be added to datasets with a defined category and type (URL, unique identifier, file in dataset, uploaded file).
* '''Sample definitions''' – Tools to define samples across a wide range of disciplines with tabs for defining the sample '''description''', '''container''', '''composition''', and '''sample properties'''. Sample components are defined by '''type''', '''role''', '''quantity''', and '''isotopic labeling''' with additional details based on component type (protein, chemical formula, carbohydrate, mixtures, polymers, etc.). Tools exist for creating sets of samples for environmental and metabolomics, and an interaction manager allows component interactions to be defined.
* '''Organization''' – All lab datasets are accessible from a single view. Hierarchical structure (Projects > Studies > Collections) mirrors a file system for lab data. User collections supported.
* '''Navigation bar''' – Sidebar enables switching between public, KB, lab/personal, and all datasets & samples.

'''== Public and Published Datasets =='''
* '''Public Datasets''' – Datasets may be marked public anytime and automatically become public three years after harvesting. Release dates may be extended in one-year blocks.
* '''Published datasets & collections''' – Immutable copies of datasets with persistent unique identifier (PUI). Datasets may be published independently or as part of a published collection.

'''== Lab Administration =='''
* '''Principal Investigators (PIs)''' – PIs in NAN are vetted and act as stewards to data collected by their lab members.
* '''Projects, Studies, Collections & Funding''' – Projects are defined at the lab level and provide three-level hierarchy for organizing lab data. Projects allow fine-grained permissions.
* '''Funding Sources''' – Funding sources are easily added with auto-population for some funding sources.
* '''Permissions''' – Intuitive matrix for controlling lab permissions for current and past users along with collaborators. Lab group defaults allow easy management.
* '''PI Delegate''' – PI delegates act on behalf of the PI reducing administrative burden.

'''== Facility Management (viewable by Facility managers and staff) =='''
* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.
* '''User management''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.
* '''Full access to data''' – Facility managers act as stewards of datasets collected in their facility and have the privileges to view, reassign, and purge data.
* '''NDTS''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.

'''== Virtual Network Operations Center (vNOC) =='''
* Role-based dashboards with increasing scope:
** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.
** '''PI/User View''' – breaks those metrics down for the lab and individual.
** '''Facility/Administrator View''' – layers on spectrometer uptime, harvesting status, and storage metrics for individual facilities or the whole network, for NAN administrators.

'''== Help & Support =='''
* '''FAQs''' – Quick answers to common questions.
* '''Wiki''' – Community-editable documentation on the portal and NDTS.
* '''Support tickets''' – Submit through the portal or email (support@usnan.org).

← Older revision		Revision as of 16:29, 29 July 2025
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	* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.		* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.
	* '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and processed data.		* '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and processed data.
	* '''Vignette library''' – Community-driven summaries of ~~peer-reviewed~~ NMR studies showcasing real-world applications.		* '''Vignette library''' – Community-driven summaries of published NMR studies showcasing real-world applications.
	* '''Materials Periodic Table''' – Interactive periodic table to explore the feasibility of utilizing NMR in materials science.		* '''Materials Periodic Table''' – Interactive periodic table to explore the feasibility of utilizing NMR of different isotopes in materials science.

	== '''Facilities and Instruments''' ==		== '''Facilities and Instruments''' ==
	* '''Ultra-High-Field (UHF) NMR spectrometers''' – Open-access to two 1.1 GHz NMR instruments: one for solids (NMRFAM), one for solutions (CCRC)		* '''Ultra-High-Field (UHF) NMR spectrometers''' – Open-access to two 1.1 GHz NMR instruments: one for solids (NMRFAM), one for solutions (CCRC)
	* '''Facilities''' – Views of all facilities connected to the NAN network and ~~the~~ services ~~which they provide~~		* '''Facilities''' – Views of all facilities connected to the NAN network including their instruments and services
	* '''Instruments''' – Filterable and sortable tables that list all spectrometers, and probes, connected to the NAN network		* '''Instruments''' – Filterable and sortable tables that list all spectrometers, and probes, connected to the NAN network
	* '''UHF access request system''' – Structured, review-based workflow to request access to NAN’s two 1.1 GHz spectrometers and other UHF assets that choose to utilize the UHF request system.		* '''UHF access request system''' – Structured, review-based workflow to request access to NAN’s two 1.1 GHz spectrometers and other UHF assets that choose to utilize the UHF request system.
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	== '''Data Transport & Management''' ==		== '''Data Transport & Management''' ==
	* '''NDTS (NAN Data Transport System)''' – automated pipeline that harvests raw experiment data from spectrometer workstations to the central archive with rich metadata linking (facility, spectrometer, probe, user, project, study, sample, experimental parameters, etc.).		* '''NDTS (NAN Data Transport System)''' – automated pipeline that harvests raw experiment data from spectrometer workstations to the central archive with rich metadata linking (facility, spectrometer, probe, user, project, study, sample, experimental parameters, etc.).
	* '''Secure ~~archival~~''' – NAN harvested datasets are stored on an enterprise-class network attached storage device and backed up to a geo-dispersed WORM enabled S3 bucket with high data durability. The NAN database is replicated across two datacenters and backed up daily.		* '''Manual Dataset Upload''' - ability to bulk upload datasets from a NAN connected spectrometer prior to NDTS installation.
	* '''Data Browsers''' – Suite of tables for viewing and managing '''datasets''', '''samples''', and '''collections'''. Tables are customizable and each column may be filtered and sorted allowing for powerful queries. Standard and user-defined filters provide quick access to common views. A context menu allows easy access to actions.		* '''Secure Archival''' – NAN harvested datasets are stored on an enterprise-class network attached storage device and backed up to a geo-dispersed WORM enabled S3 bucket with high data durability. The NAN database is replicated across two datacenters and backed up daily.
			* '''Data Browsers''' – Suite of tables for viewing and managing '''''datasets''''', '''''samples''''', and '''''collections'''''. Tables are customizable and each column may be filtered and sorted allowing for powerful queries. Standard and user-defined filters provide quick access to common views. A context menu allows easy access to '''''actions'''''.
	* '''Actions''' – Actions allow datasets to be viewed/edited, reassigned, downloaded, pushed to NMRbox, linked to samples, and annotated with classifications, tags, and notes. Actions work with multi-select for efficiency.		* '''Actions''' – Actions allow datasets to be viewed/edited, reassigned, downloaded, pushed to NMRbox, linked to samples, and annotated with classifications, tags, and notes. Actions work with multi-select for efficiency.
	* '''Supplemental ~~data~~''' – Supplemental data may be added to datasets with a defined category and type (URL, unique identifier, file in dataset, uploaded file).		* '''Supplemental Data''' – Supplemental data may be added to datasets with a defined category and type (URL, unique identifier, file in dataset, uploaded file).
	* '''Sample ~~definitions~~''' – Tools to define samples across a wide range of disciplines with tabs for defining the sample '''description''', '''container''', '''composition''', and '''~~sample~~ properties'''. Sample components are defined by '''type''', '''role''', '''quantity''', and '''isotopic labeling''' with additional details based on component type (protein, chemical formula, carbohydrate, mixtures, polymers, etc.). Tools exist for creating sets of samples for environmental and metabolomics, and an interaction manager allows component interactions to be defined.		* '''Sample Definitions''' – Tools to define samples across a wide range of disciplines with tabs for defining the sample '''''description''''', '''''container''''', '''''composition''''', and '''''properties'''''. Sample components are defined by '''''type''''', '''''role''''', '''''quantity''''', and '''''isotopic labeling''''' with additional details based on component type (protein, chemical formula, carbohydrate, mixtures, polymers, etc.). Tools exist for creating sets of samples for environmental and metabolomics, and an interaction manager allows component interactions to be defined.
	* '''Organization''' – All lab datasets are accessible from a single view. Hierarchical structure (Projects > Studies > Collections) mirrors a file system for lab data. User collections supported.		* '''Organization''' – All lab datasets are accessible from a single view. Hierarchical structure (Projects > Studies > Collections) mirrors a file system for lab data. User collections supported.
	* '''Navigation ~~bar~~''' – Sidebar enables switching between public, KB, lab/personal, and all datasets & samples.		* '''Navigation Bar''' – Sidebar enables switching between public, KB, lab/personal, and all datasets & samples.

	== '''Public and Published Datasets''' ==		== '''Public and Published Datasets''' ==
	* '''Public ~~Datasets~~''' – Datasets may be marked public anytime and automatically become public three years after harvesting. Release dates may be extended in one-year blocks.		* '''Public datasets''' – Datasets may be marked public anytime and automatically become public three years after harvesting. Release dates may be extended in one-year blocks.
	* '''Published datasets & collections''' – Immutable copies of datasets with persistent unique identifier (PUI). Datasets may be published independently or as part of a published collection.		* '''Published datasets & collections''' – Immutable copies of datasets with persistent unique identifier (PUI). Datasets may be published independently or as part of a published collection.

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	== '''Facility Management''' (viewable by Facility managers and staff) ==		== '''Facility Management''' (viewable by Facility managers and staff) ==
	* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.		* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.
	* '''User ~~management~~''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.		* '''User Management''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.
	* '''Full ~~access~~ to ~~data~~''' – Facility managers act as stewards of datasets collected in their facility and have the privileges to view, reassign, and purge data.		* '''Full Access to Data''' – Facility managers act as stewards of datasets collected in their facility and have the privileges to view, reassign, and purge data.
	* '''NDTS''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.		* '''NDTS''' '''Software''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.

	== '''virtual Network Operations Center (vNOC)''' ==		== '''virtual Network Operations Center (vNOC)''' ==
	* Role-based dashboards with increasing scope:		* [[User Roles and Permissions\|Role-based]] dashboards with increasing scope:
	** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.		** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.
	** '''PI/User View''' – breaks those metrics down for the lab and individual.		** '''PI/User View''' – breaks those metrics down for the lab and individual.
	** '''Facility/Administrator View''' – layers on spectrometer uptime, harvesting status, and storage metrics for individual facilities or the whole network, for NAN administrators.		** '''Facility/Administrator View''' – layers on spectrometer uptime, harvesting status, and storage metrics for individual facilities or the whole network, for NAN administrators.
			** '''UHF Dashboard''' - accessible by UHF committee members and administrators - provides UHF statistics for submissions based on instrument and submitter

	== '''Help & Support''' ==		== '''Help & Support''' ==

← Older revision		Revision as of 20:27, 9 July 2025
Line 1:		Line 1:
	'''== Knowledgebase (KB) Learning Resources =='''		== '''Knowledgebase (KB) Learning Resources''' ==
	* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.		* '''Novice KBs''' – Primers covering the use of NMR across diverse disciplines including proteins, nucleic acids, materials and chemistry, metabolomics, and other biological samples.
	* '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and processed data.		* '''Expert KB datasets''' – Exemplar datasets on test samples with well vetted pulse programs and supplemented with protocols for sample preparation, experimental setups, data processing, and analysis along with processing scripts and processed data.
Line 5:		Line 5:
	* '''Materials Periodic Table''' – Interactive periodic table to explore the feasibility of utilizing NMR in materials science.		* '''Materials Periodic Table''' – Interactive periodic table to explore the feasibility of utilizing NMR in materials science.

	'''== Facilities and Instruments =='''		== '''Facilities and Instruments''' ==
	* '''Ultra-High-Field (UHF) NMR spectrometers''' – Open-access to two 1.1 GHz NMR instruments: one for solids (NMRFAM), one for solutions (CCRC)		* '''Ultra-High-Field (UHF) NMR spectrometers''' – Open-access to two 1.1 GHz NMR instruments: one for solids (NMRFAM), one for solutions (CCRC)
	* '''Facilities''' – Views of all facilities connected to the NAN network and the services which they provide		* '''Facilities''' – Views of all facilities connected to the NAN network and the services which they provide
Line 11:		Line 11:
	* '''UHF access request system''' – Structured, review-based workflow to request access to NAN’s two 1.1 GHz spectrometers and other UHF assets that choose to utilize the UHF request system.		* '''UHF access request system''' – Structured, review-based workflow to request access to NAN’s two 1.1 GHz spectrometers and other UHF assets that choose to utilize the UHF request system.

	'''== Data Transport & Management =='''		== '''Data Transport & Management''' ==
	* '''NDTS (NAN Data Transport System)''' – automated pipeline that harvests raw experiment data from spectrometer workstations to the central archive with rich metadata linking (facility, spectrometer, probe, user, project, study, sample, experimental parameters, etc.).		* '''NDTS (NAN Data Transport System)''' – automated pipeline that harvests raw experiment data from spectrometer workstations to the central archive with rich metadata linking (facility, spectrometer, probe, user, project, study, sample, experimental parameters, etc.).
	* '''Secure archival''' – NAN harvested datasets are stored on an enterprise-class network attached storage device and backed up to a geo-dispersed WORM enabled S3 bucket with high data durability. The NAN database is replicated across two datacenters and backed up daily.		* '''Secure archival''' – NAN harvested datasets are stored on an enterprise-class network attached storage device and backed up to a geo-dispersed WORM enabled S3 bucket with high data durability. The NAN database is replicated across two datacenters and backed up daily.
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	* '''Navigation bar''' – Sidebar enables switching between public, KB, lab/personal, and all datasets & samples.		* '''Navigation bar''' – Sidebar enables switching between public, KB, lab/personal, and all datasets & samples.

	'''== Public and Published Datasets =='''		== '''Public and Published Datasets''' ==
	* '''Public Datasets''' – Datasets may be marked public anytime and automatically become public three years after harvesting. Release dates may be extended in one-year blocks.		* '''Public Datasets''' – Datasets may be marked public anytime and automatically become public three years after harvesting. Release dates may be extended in one-year blocks.
	* '''Published datasets & collections''' – Immutable copies of datasets with persistent unique identifier (PUI). Datasets may be published independently or as part of a published collection.		* '''Published datasets & collections''' – Immutable copies of datasets with persistent unique identifier (PUI). Datasets may be published independently or as part of a published collection.

	'''== Lab Administration =='''		== '''Lab Administration''' ==
	* '''Principal Investigators (PIs)''' – PIs in NAN are vetted and act as stewards to data collected by their lab members.		* '''Principal Investigators (PIs)''' – PIs in NAN are vetted and act as stewards to data collected by their lab members.
	* '''Projects, Studies, Collections & Funding''' – Projects are defined at the lab level and provide three-level hierarchy for organizing lab data. Projects allow fine-grained permissions.		* '''Projects, Studies, Collections & Funding''' – Projects are defined at the lab level and provide three-level hierarchy for organizing lab data. Projects allow fine-grained permissions.
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	* '''PI Delegate''' – PI delegates act on behalf of the PI reducing administrative burden.		* '''PI Delegate''' – PI delegates act on behalf of the PI reducing administrative burden.

	'''== Facility Management (viewable by Facility managers and staff) ==~~'''~~		== '''Facility Management''' (viewable by Facility managers and staff) ==
	* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.		* '''Facility Dashboards''' – Form tools for entering facility, spectrometer, and probe information.
	* '''User management''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.		* '''User management''' – Tools to add users, map local spectrometer users to NAN users, configure default NDTS harvesting for users.
Line 38:		Line 38:
	* '''NDTS''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.		* '''NDTS''' – Access to download NDTS software and a portal tool for defining NDTS filter settings.

	'''== Virtual Network Operations Center (vNOC) =='''		== '''Virtual Network Operations Center (vNOC)''' ==
	* Role-based dashboards with increasing scope:		* Role-based dashboards with increasing scope:
	** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.		** '''Public View''' – aggregates data across facilities, instruments, users, and harvested datasets.
Line 44:		Line 44:
	** '''Facility/Administrator View''' – layers on spectrometer uptime, harvesting status, and storage metrics for individual facilities or the whole network, for NAN administrators.		** '''Facility/Administrator View''' – layers on spectrometer uptime, harvesting status, and storage metrics for individual facilities or the whole network, for NAN administrators.

	'''== Help & Support =='''		== '''Help & Support''' ==
	* '''FAQs''' – Quick answers to common questions.		* '''FAQs''' – Quick answers to common questions.
	* '''Wiki''' – Community-editable documentation on the portal and NDTS.		* '''Wiki''' – Community-editable documentation on the portal and NDTS.
	* '''Support tickets''' – Submit through the portal or email (support@usnan.org).		* '''Support tickets''' – Submit through the portal or email (support@usnan.org).